species:   Rhsol
pid:       PID0547
parent:    Rhi-milR-160
paralog:   
locus:     KB317723.1:322390-322465
matures:   ['UUAGUUCCAAUUUCGUGUCCGG', 'GCAAGCUGACCCGAUUUUGGGACUAGUACC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317723.1:322390-322465

2 out of bounds
27 alignments
27 proper strand
26 stranded perfect matches

       *************************    *********************************       
GAGAAGAAGGUUAGUUCCAAUUUCGUGUCCGGACCAACGCAAGCUGACCCGAUUUUGGGACUAGUACCUUCUUAAA
...(((((((((((((((((..(((.(((((......))......))).)))..)))))))))..))))))))...
----------UUAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=22 a=0 c
--------------------------------------GCAAGCUGACCCGAUUUUGGGACUAGUACC-------- l=30 a=0 c*
---------GUUAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=23 a=10 ma
--------------------------------------GCAAGCUGACCCGAUUUUGGGACUAGUACCU------- l=31 a=0 ma*

-----------------------------------AACGCAAGCUGACCCGAUUUUGGGACUAG------------ l=29 a=1 
-------------------------UGUCCGGACCAACGCAAGC-------------------------------- l=19 a=2 
-----------UAGUUCCAAUUUCGUGUCCGGA------------------------------------------- l=22 a=1 
----------UUAGUUCCAAUUUCGUGUCCGGA------------------------------------------- l=23 a=1 
----------UUAGUUCCAAUUUCGUGUCCGGACCAACGC------------------------------------ l=30 a=1 
---------GUUAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=23 a=10 (ma)
---------GUUAGUUCCAAUUUCGUGUCCGGA------------------------------------------- l=24 a=5 
---------GUUAGUUCCAAUUUCGUGUCCGGAC------------------------------------------ l=25 a=1 
---------GUUAGUUCCAAUUUCGcGUCCGGAC------------------------------------------ l=25 a=1 
---------GUUAGUUCCAAUUUCGUGUCCGGACC----------------------------------------- l=26 a=1 
---------GUUAGUUCCAAUUUCGUGUCCGGACCA---------------------------------------- l=27 a=1 
---------GUUAGUUCCAAUUUCGUGUCCGGACCAAC-------------------------------------- l=29 a=1 
---------GUUAGUUCCAAUUUCGUGUCCGGACCAACG------------------------------------- l=30 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101010
fn-111
